MolNFT v1 · #108086 · protein

Human galectin-7 in complex with a galactose based dendron D2-2.

4UW5: “Human galectin-7 in complex with a galactose based dendron D2-2.”. X-ray diffraction, 1 ligand (4S0), 5 pockets (best druggability 0.74). MolNFT v1 #108086 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4UW5
Type: protein
Length: 794 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Human galectin-7
UniProt: P47929
Ligands: 4S0
Pockets: 5 · best druggability 0.74

Structure

x-ray diffraction · 2 distinct chains · 2% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C, D, F	Human galectin-7	protein	132	2% helix, 55% strand	P47929
B, E	Human galectin-7	protein	133	2% helix, 56% strand	P47929

Ligands and binding sites

4S0 · Dendron D2-1 · ligand · 2 copies · chains A, D, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	928	0.74	0.78	82	empty
2	154	0.48	0.78	25	empty
3	58	0.34	0.78	15	empty
4	61	0.30	0.75	16	empty
5	52	0.28	0.75	15	empty

Interfaces

9 interfaces between chains.

C–D · 878 Å² buried · 16 hydrogen bonds · protein-protein
E–F · 844 Å² buried · 18 hydrogen bonds · protein-protein
A–B · 828 Å² buried · 18 hydrogen bonds · protein-protein
C–E · 269 Å² buried · 4 hydrogen bonds · protein-protein
D–F · 196 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

4UW5 · Human galectin-7 in complex with a galactose based dendron D2-2. · the same entry in another collection · chain F against F, TM-score 1.00
P47929 · AlphaFold monomer V2.0 prediction for galectin-7 (P47929) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P47929
Elsewhere: RCSB PDB 4UW5 · PDBe 4UW5 · UniProt P47929

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.