MolNFT v1 · #10777 · protein
Alginate lyase from alteromonas SP.272
1J1T: “Alginate lyase from alteromonas SP.272”. X-ray diffraction, 2 ligands (CA, SO4), 1 pocket (best druggability 0.42). MolNFT v1 #10777 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1J1T
- Type
- protein
- Length
- 228 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alginate lyase
- EC
- 4.2.2.3
- UniProt
- P84143
- Ligands
- CA, SO4
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alginate lyase (EC 4.2.2.3) | protein | 228 | 11% helix, 51% strand | P84143 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 165 | 0.42 | 0.74 | 29 | SO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1J1T · Alginate lyase from Alteromonas sp.272 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84143
- Elsewhere: RCSB PDB 1J1T · PDBe 1J1T · UniProt P84143
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