MolNFT v1 · #107478 · protein
Kinetic crystallography of ALPHA_E7-carboxylesterse from lucilla cuprina - absorbed X-ray dose 3.70 mgy at 100K
4UBI · E3: “Kinetic crystallography of ALPHA_E7-carboxylesterse from lucilla cuprina - absorbed X-ray dose 3.70 mgy at…”. X-ray diffraction, 1 ligand (DPF), 3 pockets (best druggability 0.75). MolNFT v1 #107478 on GenesisL1: 3D structure…
- PDB
- 4UBI
- Type
- protein
- Length
- 566 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3
- UniProt
- Q25252
- Ligands
- DPF
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 | protein | 566 | 37% helix, 16% strand | Q25252 |
Ligands and binding sites
- DPF · Diethyl hydrogen phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 644 | 0.75 | 0.81 | 51 | DPF |
| 2 | 253 | 0.64 | 0.82 | 36 | empty |
| 3 | 140 | 0.51 | 0.79 | 28 | empty |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 4UBI · KINETIC CRYSTALLOGRAPHY OF ALPHA_E7-CARBOXYLESTERSE FROM LUCILLA CUPRINA - ABSORBED X-RAY… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q25252
- Elsewhere: RCSB PDB 4UBI · PDBe 4UBI · UniProt Q25252
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.