MolNFT v1 · #107027 · protein
Construct of mical-1 containing the monooxygenase and calponin homology domains
4TXK · Protein-methionine sulfoxide oxidase MICAL1: “Construct of mical-1 containing the monooxygenase and calponin homology domains”. X-ray diffraction, 1 ligand (FAD), 4 pockets (best druggability 0.74). MolNFT v1 #107027 on GenesisL1…
- PDB
- 4TXK
- Type
- protein
- Length
- 581 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein-methionine sulfoxide oxidase MICAL1
- EC
- 1.14.13.-
- UniProt
- Q8VDP3
- Ligands
- FAD
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein-methionine sulfoxide oxidase MICAL1 (EC 1.14.13.-) | protein | 581 | 40% helix, 17% strand | Q8VDP3 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 840 | 0.74 | 0.78 | 79 | PEG, FAD |
| 2 | 58 | 0.45 | 0.84 | 16 | empty |
| 3 | 53 | 0.43 | 0.83 | 16 | empty |
| 4 | 145 | 0.40 | 0.74 | 31 | empty |
Compared structures
- 4TXK · Construct of MICAL-1 containing the monooxygenase and calponin homology domains · the same entry in another collection · chain A against A, TM-score 1.00
- Q8VDP3 · AlphaFold monomer V2.0 prediction for [F-actin]-monooxygenase MICAL1 (Q8VDP3) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8VDP3
- Elsewhere: RCSB PDB 4TXK · PDBe 4TXK · UniProt Q8VDP3
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