MolNFT v1 · #106884 · protein
Crystal structure of CYP119 from sulfolobus acidocaldarius, complexed with 4-(4-bromophenyl)-1H imidazole
4TT5 · Cytochrome P450 119: “Crystal structure of CYP119 from sulfolobus acidocaldarius, complexed with 4-(4-bromophenyl)-1H imidazole”. X-ray diffraction, 2 ligands (HEM, 36Y), 3 pockets (best druggability 0.86). MolNFT v1 #106884 on…
- PDB
- 4TT5
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome P450 119
- EC
- 1.14.-.-, 1.11.1.7
- UniProt
- Q55080
- Ligands
- HEM, 36Y
- Pockets
- 3 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome P450 119 (EC 1.14.-.-, 1.11.1.7) | protein | 367 | 49% helix, 14% strand | Q55080 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- 36Y · 4-(4-bromophenyl)-1H-imidazole · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 671 | 0.86 | 0.90 | 60 | HEM, 36Y |
| 2 | 160 | 0.53 | 0.80 | 25 | empty |
| 3 | 89 | 0.36 | 0.75 | 19 | empty |
Compared structures
- 4TT5 · Crystal Structure of CYP119 from Sulfolobus acidocaldarius, complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q55080 · AlphaFold monomer V2.0 prediction for cytochrome P450 119 (Q55080) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55080
- Elsewhere: RCSB PDB 4TT5 · PDBe 4TT5 · UniProt Q55080
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.