MolNFT v1 · #106608 · protein
Crystal structure of protease-associated domain of arabidopsis vacuolar sorting receptor 1
4TJV · Vacuolar-sorting receptor 1: “Crystal structure of protease-associated domain of arabidopsis vacuolar sorting receptor 1”. X-ray diffraction, 1 ligand (IOD), 1 pocket (best druggability 0.38). MolNFT v1 #106608 on GenesisL1: 3D…
- PDB
- 4TJV
- Type
- protein
- Length
- 165 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Vacuolar-sorting receptor 1
- UniProt
- P93026
- Ligands
- IOD
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Vacuolar-sorting receptor 1 | protein | 165 | 22% helix, 28% strand | P93026 |
Ligands and binding sites
- IOD · Iodide ion · ion · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.38 | 0.79 | 15 | IOD |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 4TJV · Crystal structure of protease-associated domain of Arabidopsis vacuolar sorting receptor 1 · the same entry in another collection · chain A against A, TM-score 1.00
- P93026 · AlphaFold monomer V2.0 prediction for vacuolar-sorting receptor 1 (P93026) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93026
- Elsewhere: RCSB PDB 4TJV · PDBe 4TJV · UniProt P93026
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