MolNFT v1 · #106393 · protein

Crystal structure of carbohydrate transporter solute binding protein ARAD_9553 from agrobacterium radiobacter, target efi-511541, in complex with D-arabinose

4RXT · Sugar ABC transporter: “Crystal structure of carbohydrate transporter solute binding protein ARAD_9553 from agrobacterium…”. X-ray diffraction, 1 ligand (ARA), 1 pocket (best druggability 0.30). MolNFT v1 #106393 on GenesisL1: 3D…

PDB: 4RXT
Type: protein
Length: 295 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sugar ABC transporter
UniProt: B9JKX8
Ligands: ARA
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sugar ABC transporter	protein	295	45% helix, 19% strand	B9JKX8

Ligands and binding sites

ARA · alpha-L-arabinopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.30	0.73	23	empty

Compared structures

4RXT · Crystal structure of carbohydrate transporter solute binding protein Arad_9553 from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B9JKX8
Elsewhere: RCSB PDB 4RXT · PDBe 4RXT · UniProt B9JKX8

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