MolNFT v1 · #105795 · protein
Crystal structure of truncated P-domain from grouper nervous necrosis virus capsid protein at 1.2A
4RFU · Coat protein: “Crystal structure of truncated P-domain from grouper nervous necrosis virus capsid protein at 1.2A”. X-ray diffraction, 1 ligand (CA). MolNFT v1 #105795 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4RFU
- Type
- protein
- Length
- 351 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Coat protein
- UniProt
- Q8JNX5
- Ligands
- CA
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Coat protein | protein | 117 | 10% helix, 43% strand | Q8JNX5 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B, C
- GOL · Glycerol · additive · 4 copies · chains A, B, C
- PEG · Di(hydroxyethyl)ether · additive · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
3 interfaces between chains.
- A–C · 762 Ų buried · 13 hydrogen bonds · protein-protein
- B–C · 752 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 739 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4RFU · Crystal structure of truncated P-domain from Grouper nervous necrosis virus capsid… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8JNX5
- Elsewhere: RCSB PDB 4RFU · PDBe 4RFU · UniProt Q8JNX5
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