MolNFT v1 · #105714 · protein

The crystal structure of a solute-binding protein (N280D mutant) from anabaena variabilis atcc 29413 in complex with proline

4RDC · Amino ACID/AMIDE ABC transporter substrate-binding protein…: “The crystal structure of a solute-binding protein (N280D mutant) from anabaena variabilis atcc 29413 in…”. X-ray diffraction, 2 ligands (PRO, MG), 1 pocket (best…

PDB: 4RDC
Type: protein
Length: 364 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Amino ACID/AMIDE ABC transporter substrate-binding protein, haat family
UniProt: Q3MFZ5
Ligands: PRO, MG
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Amino ACID/AMIDE ABC transporter substrate-binding protein, haat family	protein	364	46% helix, 21% strand	Q3MFZ5

Ligands and binding sites

PRO · Proline · ligand · chains A
MG · Magnesium ion · metal · chains A
GOL · Glycerol · additive · chains A
FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	70	0.36	0.77	21	empty

Modifications

Observed in the structure: 1 disulfide, 1 modified (disulfide, engineered).

Compared structures

4RDC · The crystal structure of a solute-binding protein (N280D mutant) from Anabaena variabilis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3MFZ5
Elsewhere: RCSB PDB 4RDC · PDBe 4RDC · UniProt Q3MFZ5

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