MolNFT v1 · #105428 · protein
Crystal structure of RPA70N in complex with 5-(3-((N-(4-(5- carboxyfuran-2-YL)BENZYL)ACETAMIDO)METHYL)PHENYL)-1-(3,4- dichlorophenyl)-1H-pyrazole-3-carboxylic acid
4R4Q · Replication protein a 70 kda DNA-binding subunit: “Crystal structure of RPA70N in complex with 5-(3-((N-(4-(5…”. X-ray diffraction, 1 ligand (3HZ), 1 pocket (best druggability 0.29). MolNFT v1 #105428 on GenesisL1: 3D structure…
- PDB
- 4R4Q
- Type
- protein
- Length
- 121 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Replication protein a 70 kda DNA-binding subunit
- UniProt
- P27694
- Ligands
- 3HZ
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Replication protein a 70 kda DNA-binding subunit | protein | 121 | 20% helix, 41% strand | P27694 |
Ligands and binding sites
- 3HZ · 5-[4-({acetyl[4-(5-carboxyfuran-2-yl)benzyl]amino}methyl)phenyl]-1-(3,4-dichlorophenyl)-1H-pyrazole-3-carboxylic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.29 | 0.73 | 17 | empty |
Compared structures
- 4R4Q · Crystal structure of RPA70N in complex with 5-(3-((N-(4-(5-carboxyfuran-2-yl)benzyl)acetam… · the same entry in another collection · chain A against A, TM-score 1.00
- P27694 · AlphaFold monomer V2.0 prediction for replication protein a 70 kda DNA-binding subunit… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27694
- Elsewhere: RCSB PDB 4R4Q · PDBe 4R4Q · UniProt P27694
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