MolNFT v1 · #104937 · protein
Crystal structure of gaf domain of potassium sensor histidine kinase kdpd from escherichia COLI
4QPR · Sensor protein kdpd: “Crystal structure of gaf domain of potassium sensor histidine kinase kdpd from escherichia COLI”. X-ray diffraction, 1 pocket (best druggability 0.33). MolNFT v1 #104937 on GenesisL1: 3D structure, binding…
- PDB
- 4QPR
- Type
- protein
- Length
- 142 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sensor protein kdpd
- EC
- 2.7.13.3
- UniProt
- P21865
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sensor protein kdpd (EC 2.7.13.3) | protein | 142 | 47% helix, 20% strand | P21865 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.33 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4QPR · CRYSTAL STRUCTURE OF GAF DOMAIN of POTASSIUM SENSOR HISTIDINE KINASE KDPD FROM… · the same entry in another collection · chain A against A, TM-score 1.00
- P21865 · AlphaFold monomer V2.0 prediction for sensor protein kdpd (P21865) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21865
- Elsewhere: RCSB PDB 4QPR · PDBe 4QPR · UniProt P21865
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