Research workbench
Crystal structure of gaf domain of potassium sensor histidine kinase kdpd from escherichia COLI
Analyse Crystal structure of gaf domain of potassium sensor histidine kinase kdpd from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4QPR
- Type
- protein
- Length
- 142 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sensor protein kdpd
- EC
- 2.7.13.3
- UniProt
- P21865
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 47% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sensor protein kdpd (EC 2.7.13.3) | protein | 142 | 47% helix, 20% strand | P21865 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.33 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4QPR · CRYSTAL STRUCTURE OF GAF DOMAIN of POTASSIUM SENSOR HISTIDINE KINASE KDPD FROM… · the same entry in another collection · chain A against A, TM-score 1.00
- P21865 · AlphaFold monomer V2.0 prediction for sensor protein kdpd (P21865) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21865
- Elsewhere: RCSB PDB 4QPR · PDBe 4QPR · UniProt P21865
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