MolNFT v1 · #10493 · protein

Solution structure of the prokaryotic phospholipase A2 from streptomyces violaceoruber

1IT4: “Solution structure of the prokaryotic phospholipase A2 from streptomyces violaceoruber”. Solution nmr, 1 ligand (CA), 1 pocket (best druggability 0.42). MolNFT v1 #10493 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1IT4
Type: protein
Length: 122 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phospholipase A2
EC: 3.1.1.4
UniProt: Q9Z4W2
Ligands: CA
Pockets: 1 · best druggability 0.42

Structure

solution nmr · 1 distinct chain · 70% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phospholipase A2 (EC 3.1.1.4)	protein	122	70% helix, 0% strand	Q9Z4W2

Ligands and binding sites

CA · Calcium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.42	0.78	18	CA

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1IT4 · Solution structure of the prokaryotic Phospholipase A2 from Streptomyces violaceoruber · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Z4W2
Elsewhere: RCSB PDB 1IT4 · PDBe 1IT4 · UniProt Q9Z4W2

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