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MolNFT v1 · #104842 · protein

MST3 in complex with pp-121, 1-cyclopentyl-3-(1H-PYRROLO[2,3- B]PYRIDIN-5-yl)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-amine

4QMW · SERINE/THREONINE-protein kinase 24: “MST3 in complex with pp-121, 1-cyclopentyl-3-(1H-PYRROLO[2,3…”. X-ray diffraction, 1 ligand (KS1), 1 pocket (best druggability 0.63). MolNFT v1 #104842 on GenesisL1: 3D structure, binding sites…

PDB
4QMW
Type
protein
Length
287 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
SERINE/THREONINE-protein kinase 24
EC
2.7.11.1
UniProt
Q9Y6E0
Ligands
KS1
Pockets
1 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASERINE/THREONINE-protein kinase 24 (EC 2.7.11.1)protein28741% helix, 19% strandQ9Y6E0

Ligands and binding sites

  • KS1 · 1-cyclopentyl-3-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine · ligand · chains A
  • EDO · 1,2-ethanediol · additive · chains A
  • ACT · Acetate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12870.630.8033KS1

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

  • 4QMW · MST3 in complex with pp-121, 1-cyclopentyl-3-(1H-PYRROLO[2,3-B]PYRIDIN-5-yl)-1H-PYRAZOLO[3… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9Y6E0 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase 24 (Q9Y6E0) · a predicted model of the same protein · chain A against A, TM-score 0.93

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