MolNFT v1 · #104842 · protein
MST3 in complex with pp-121, 1-cyclopentyl-3-(1H-PYRROLO[2,3- B]PYRIDIN-5-yl)-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-amine
4QMW · SERINE/THREONINE-protein kinase 24: “MST3 in complex with pp-121, 1-cyclopentyl-3-(1H-PYRROLO[2,3…”. X-ray diffraction, 1 ligand (KS1), 1 pocket (best druggability 0.63). MolNFT v1 #104842 on GenesisL1: 3D structure, binding sites…
- PDB
- 4QMW
- Type
- protein
- Length
- 287 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein kinase 24
- EC
- 2.7.11.1
- UniProt
- Q9Y6E0
- Ligands
- KS1
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase 24 (EC 2.7.11.1) | protein | 287 | 41% helix, 19% strand | Q9Y6E0 |
Ligands and binding sites
- KS1 · 1-cyclopentyl-3-(1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine · ligand · chains A
- EDO · 1,2-ethanediol · additive · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 287 | 0.63 | 0.80 | 33 | KS1 |
Modifications
Observed in the structure: 1 modified (phosphorylation).
Compared structures
- 4QMW · MST3 in complex with pp-121, 1-cyclopentyl-3-(1H-PYRROLO[2,3-B]PYRIDIN-5-yl)-1H-PYRAZOLO[3… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y6E0 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase 24 (Q9Y6E0) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y6E0
- Elsewhere: RCSB PDB 4QMW · PDBe 4QMW · UniProt Q9Y6E0
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