MolNFT v1 · #104833 · protein
MST3 in complex with at-9283, 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]- 1H-pyrazol-3-yl}-1H-benzimidazol-6-YL)METHYL]MORPHOLIN-4-ium
4QMM · SERINE/THREONINE-protein kinase 24: “MST3 in complex with at-9283, 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]…”. X-ray diffraction, 2 ligands (35R, CL), 1 pocket (best druggability 0.66). MolNFT v1 #104833 on GenesisL1: 3D structure…
- PDB
- 4QMM
- Type
- protein
- Length
- 289 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein kinase 24
- EC
- 2.7.11.1
- UniProt
- Q9Y6E0
- Ligands
- 35R, CL
- Pockets
- 1 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase 24 (EC 2.7.11.1) | protein | 289 | 39% helix, 19% strand | Q9Y6E0 |
Ligands and binding sites
- 35R · 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea · ligand · chains A
- CL · Chloride ion · ion · chains A
- ACT · Acetate ion · additive · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 277 | 0.66 | 0.82 | 35 | 35R |
Modifications
Observed in the structure: 1 modified (phosphorylation).
Compared structures
- 4QMM · MST3 in complex with at-9283, 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]-1H-pyrazol-3-yl}-1H-b… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9Y6E0 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase 24 (Q9Y6E0) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y6E0
- Elsewhere: RCSB PDB 4QMM · PDBe 4QMM · UniProt Q9Y6E0
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