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MolNFT v1 · #104833 · protein

MST3 in complex with at-9283, 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]- 1H-pyrazol-3-yl}-1H-benzimidazol-6-YL)METHYL]MORPHOLIN-4-ium

4QMM · SERINE/THREONINE-protein kinase 24: “MST3 in complex with at-9283, 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]…”. X-ray diffraction, 2 ligands (35R, CL), 1 pocket (best druggability 0.66). MolNFT v1 #104833 on GenesisL1: 3D structure…

PDB
4QMM
Type
protein
Length
289 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
SERINE/THREONINE-protein kinase 24
EC
2.7.11.1
UniProt
Q9Y6E0
Ligands
35R, CL
Pockets
1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASERINE/THREONINE-protein kinase 24 (EC 2.7.11.1)protein28939% helix, 19% strandQ9Y6E0

Ligands and binding sites

  • 35R · 1-cyclopropyl-3-{3-[5-(morpholin-4-ylmethyl)-1H-benzimidazol-2-yl]-1H-pyrazol-4-yl}urea · ligand · chains A
  • CL · Chloride ion · ion · chains A
  • ACT · Acetate ion · additive · 2 copies · chains A
  • EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12770.660.823535R

Modifications

Observed in the structure: 1 modified (phosphorylation).

Compared structures

  • 4QMM · MST3 in complex with at-9283, 4-[(2-{4-[(CYCLOPROPYLCARBAMOYL)AMINO]-1H-pyrazol-3-yl}-1H-b… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q9Y6E0 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase 24 (Q9Y6E0) · a predicted model of the same protein · chain A against A, TM-score 0.94

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