MolNFT v1 · #104383 · protein

TRNA-guanine transglycosylase (tgt) in complex with methyl 4-[2-({6- amino-8-oxo-1H,7H,8H-IMIDAZO[4,5-G]QUINAZOLIN-2-YL}AMINO) ETHYL]BENZOATE

4Q8U · Queuine tRNA-ribosyltransferase: “TRNA-guanine transglycosylase (tgt) in complex with methyl 4-[2-({6…”. X-ray diffraction, 2 ligands (2YW, ZN), 1 pocket (best druggability 0.61). MolNFT v1 #104383 on GenesisL1: 3D structure…

PDB: 4Q8U
Type: protein
Length: 369 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Queuine tRNA-ribosyltransferase
EC: 2.4.2.29
UniProt: P28720
Ligands: 2YW, ZN
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Queuine tRNA-ribosyltransferase (EC 2.4.2.29)	protein	369	46% helix, 19% strand	P28720

Ligands and binding sites

2YW · methyl 4-{2-[(6-amino-8-oxo-7,8-dihydro-1H-imidazo[4,5-g]quinazolin-2-yl)amino]ethyl}benzoate · ligand · chains A
ZN · Zinc ion · metal · chains A
GOL · Glycerol · additive · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.61	0.81	44	2YW

Compared structures

4Q8U · tRNA-Guanine Transglycosylase (TGT) in Complex with Methyl… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P28720
Elsewhere: RCSB PDB 4Q8U · PDBe 4Q8U · UniProt P28720

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