MolNFT v1 · #104373 · protein
Crystal structure of polysaccharide lyase family 18 aly-SJ02 P-catd
4Q8K · Alginase: “Crystal structure of polysaccharide lyase family 18 aly-SJ02 P-catd”. X-ray diffraction, 2 ligands (CA, SO4), 1 pocket (best druggability 0.37). MolNFT v1 #104373 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4Q8K
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alginase
- Ligands
- CA, SO4
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alginase | protein | 227 | 11% helix, 50% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 118 | 0.37 | 0.74 | 26 | SO4 |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 4Q8K · Crystal structure of polysaccharide lyase family 18 aly-SJ02 P-CATD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4Q8K · PDBe 4Q8K
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.