MolNFT v1 · #104315 · protein
Lpob C-terminal domain from salmonella enterica (sel-met)
4Q6V · Penicillin-binding protein activator lpob: “Lpob C-terminal domain from salmonella enterica (sel-met)”. X-ray diffraction, 1 pocket (best druggability 0.46). MolNFT v1 #104315 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4Q6V
- Type
- protein
- Length
- 135 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein activator lpob
- UniProt
- Q8ZQ08
- Pockets
- 1 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein activator lpob | protein | 135 | 36% helix, 26% strand | Q8ZQ08 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 117 | 0.46 | 0.79 | 18 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 4Q6V · LpoB C-terminal domain from Salmonella enterica (Sel-Met) · the same entry in another collection · chain A against A, TM-score 1.00
- Q8ZQ08 · AlphaFold monomer V2.0 prediction for penicillin-binding protein activator lpob (Q8ZQ08) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZQ08
- Elsewhere: RCSB PDB 4Q6V · PDBe 4Q6V · UniProt Q8ZQ08
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