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Lpob C-terminal domain from salmonella enterica (sel-met)

Analyse Lpob C-terminal domain from salmonella enterica (sel-met) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4Q6V
Type: protein
Length: 135 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Penicillin-binding protein activator lpob
UniProt: Q8ZQ08
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Penicillin-binding protein activator lpob	protein	135	36% helix, 26% strand	Q8ZQ08

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.46	0.79	18	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

4Q6V · LpoB C-terminal domain from Salmonella enterica (Sel-Met) · the same entry in another collection · chain A against A, TM-score 1.00
Q8ZQ08 · AlphaFold monomer V2.0 prediction for penicillin-binding protein activator lpob (Q8ZQ08) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8ZQ08
Elsewhere: RCSB PDB 4Q6V · PDBe 4Q6V · UniProt Q8ZQ08

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