MolNFT v1 · #104313 · protein

The crystal structure of a class V chitininase from pseudomonas fluorescens pf-5

4Q6T · Glycosyl hydrolase, family 18: “The crystal structure of a class V chitininase from pseudomonas fluorescens pf-5”. X-ray diffraction, 3 ligands (NI, CD, CL), 1 pocket (best druggability 0.66). MolNFT v1 #104313 on GenesisL1: 3D…

PDB: 4Q6T
Type: protein
Length: 337 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycosyl hydrolase, family 18
UniProt: Q4KHD9
Ligands: NI, CD, CL
Pockets: 1 · best druggability 0.66

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycosyl hydrolase, family 18	protein	337	41% helix, 26% strand	Q4KHD9

Ligands and binding sites

NI · Nickel (II) ion · metal · 3 copies · chains A
CD · Cadmium ion · metal · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	416	0.66	0.79	54	GOL

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

4Q6T · The crystal structure of a class V chitininase from Pseudomonas fluorescens Pf-5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4KHD9
Elsewhere: RCSB PDB 4Q6T · PDBe 4Q6T · UniProt Q4KHD9

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