MolNFT v1 · #104274 · protein
Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from bacteroides uniformis atcc 8492 at 1.30 a resolution
4Q5K · Uncharacterized protein: “Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from bacteroides uniformis atcc 8492…”. X-ray diffraction, 2 ligands (2YP, NA), 2 pockets (best druggability 0.70). MolNFT v1 #104274…
- PDB
- 4Q5K
- Type
- protein
- Length
- 237 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A7V5T8
- Ligands
- 2YP, NA
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 237 | 37% helix, 22% strand | A7V5T8 |
Ligands and binding sites
- 2YP · (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid · ligand · chains A
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 404 | 0.70 | 0.82 | 37 | 2YP |
| 2 | 50 | 0.24 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 4Q5K · Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7V5T8
- Elsewhere: RCSB PDB 4Q5K · PDBe 4Q5K · UniProt A7V5T8
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