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Ligand · 2YP

2YP · (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid

2YP, (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid (C19 H30 N2 O12, 478.4 g/mol), in the MolNFT structures on…

Component
2YP
Formula
C19 H30 N2 O12
Class
ligand
Structures
2
PDB entries
1

Binding sites

2YP in 2 structures; the first of them:

  • 4Q5K · Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides… · 2YP A301 · binds TYR41, LEU46, GLU47, ASP62, CYS63, THR64, THR65, TYR106 and 12 more
  • 4Q5K · Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from bacteroides… · 2YP A301 · binds TYR41, LEU46, GLU47, ASP62, CYS63, THR64, THR65, TYR106 and 12 more

Residues it binds most

TYR 2, HIS 2, LEU 2, MSE 2, THR 2, ALA 2, ARG 2, ASP 2, CYS 2, GLU 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion

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