MolNFT v1 · #104259 · protein
Crystal structure of a putative molybdenum cofactor biosynthesis protein F from burkholderia cenocepacia J2315
4Q51 · Uncharacterized protein: “Crystal structure of a putative molybdenum cofactor biosynthesis protein F from burkholderia cenocepacia J2315”. X-ray diffraction, 1 ligand (CA), 4 pockets (best druggability 0.78). MolNFT v1 #104259 on…
- PDB
- 4Q51
- Type
- protein
- Length
- 529 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- B4EN46
- Ligands
- CA
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 264 | 7% helix, 52% strand | B4EN46 |
| B | Uncharacterized protein | protein | 265 | 7% helix, 53% strand | B4EN46 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.78 | 0.98 | 34 | empty |
| 2 | 50 | 0.72 | 0.99 | 16 | CA |
| 3 | 88 | 0.50 | 0.83 | 19 | empty |
| 4 | 84 | 0.43 | 0.79 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1726 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 4Q51 · Crystal structure of a putative molybdenum cofactor biosynthesis protein F from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B4EN46
- Elsewhere: RCSB PDB 4Q51 · PDBe 4Q51 · UniProt B4EN46
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