MolNFT v1 · #104040 · protein
The conserved ubiquitin-like protein HUB1 plays a critical role in splicing in human cells
4PYU · Ubiquitin-like protein 5: “The conserved ubiquitin-like protein HUB1 plays a critical role in splicing in human cells”. X-ray diffraction. MolNFT v1 #104040 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4PYU
- Type
- protein
- Length
- 563 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin-like protein 5; U4/U6.U5 tri-snrnp-associated protein 1
- UniProt
- Q9BZL1, O43290
Structure
x-ray diffraction · 4 distinct chains · 24% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ubiquitin-like protein 5 | protein | 76 | 20% helix, 38% strand | Q9BZL1 |
| B, O, S | Ubiquitin-like protein 5 | protein | 75 | 20% helix, 39% strand | Q9BZL1 |
| C, D, H, L, P, T | U4/U6.U5 tri-snrnp-associated protein 1 | protein | 19 | 53% helix, 0% strand | O43290 |
| G, K | Ubiquitin-like protein 5 | protein | 74 | 24% helix, 41% strand | Q9BZL1 |
Interfaces
6 interfaces between chains.
- K–L · 539 Ų buried · 5 hydrogen bonds · protein-protein
- A–C · 537 Ų buried · 7 hydrogen bonds · protein-protein
- O–P · 537 Ų buried · 5 hydrogen bonds · protein-protein
- G–H · 529 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 525 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4PYU · The conserved ubiquitin-like protein hub1 plays a critical role in splicing in human cells · the same entry in another collection · chain T against T, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BZL1
- Every structure of UniProt O43290
- Elsewhere: RCSB PDB 4PYU · PDBe 4PYU · UniProt Q9BZL1 · UniProt O43290
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