MolNFT v1 · #103898 · protein

TRNA-guanine transglycosylase (tgt) mutant D102N in complex with 6- amino-2-(methylamino)-1H,7H,8H-IMIDAZO[4,5-G]QUINAZOLIN-8-one

4PUL · Queuine tRNA-ribosyltransferase: “TRNA-guanine transglycosylase (tgt) mutant D102N in complex with 6…”. X-ray diffraction, 2 ligands (2WU, ZN), 1 pocket (best druggability 0.61). MolNFT v1 #103898 on GenesisL1: 3D structure, binding…

PDB: 4PUL
Type: protein
Length: 367 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Queuine tRNA-ribosyltransferase
EC: 2.4.2.29
UniProt: P28720
Ligands: 2WU, ZN
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Queuine tRNA-ribosyltransferase (EC 2.4.2.29)	protein	367	47% helix, 18% strand	P28720

Ligands and binding sites

2WU · 6-amino-2-(methylamino)-3,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one · ligand · chains A
ZN · Zinc ion · metal · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	213	0.61	0.81	30	2WU

Compared structures

4PUL · tRNA-Guanine Transglycosylase (TGT) Mutant D102N in Complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P28720
Elsewhere: RCSB PDB 4PUL · PDBe 4PUL · UniProt P28720

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