MolNFT v1 · #10386 · protein

Thermus thermophilus arginyl-tRNA synthetase

1IQ0: “Thermus thermophilus arginyl-tRNA synthetase”. X-ray diffraction, 5 pockets (best druggability 0.72). MolNFT v1 #10386 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1IQ0
Type: protein
Length: 588 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Arginyl-tRNA synthetase
EC: 6.1.1.19
UniProt: Q93RP5
Pockets: 5 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Arginyl-tRNA synthetase (EC 6.1.1.19)	protein	588	48% helix, 15% strand	Q93RP5

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	670	0.72	0.79	67	empty
2	52	0.34	0.78	13	empty
3	50	0.31	0.77	15	empty
4	79	0.31	0.73	14	empty
5	51	0.26	0.73	13	empty

Compared structures

1IQ0 · Thermus thermophilus arginyl-tRNA synthetase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q93RP5
Elsewhere: RCSB PDB 1IQ0 · PDBe 1IQ0 · UniProt Q93RP5

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