Research workbench
Thermus thermophilus arginyl-tRNA synthetase
Analyse Thermus thermophilus arginyl-tRNA synthetase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1IQ0
- Type
- protein
- Length
- 588 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arginyl-tRNA synthetase
- EC
- 6.1.1.19
- UniProt
- Q93RP5
- Pockets
- 5 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arginyl-tRNA synthetase (EC 6.1.1.19) | protein | 588 | 48% helix, 15% strand | Q93RP5 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 670 | 0.72 | 0.79 | 67 | empty |
| 2 | 52 | 0.34 | 0.78 | 13 | empty |
| 3 | 50 | 0.31 | 0.77 | 15 | empty |
| 4 | 79 | 0.31 | 0.73 | 14 | empty |
| 5 | 51 | 0.26 | 0.73 | 13 | empty |
Compared structures
- 1IQ0 · Thermus thermophilus arginyl-tRNA synthetase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93RP5
- Elsewhere: RCSB PDB 1IQ0 · PDBe 1IQ0 · UniProt Q93RP5
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