MolNFT v1 · #103779 · RNA

Crystal structure of an XRN1-resistant RNA from the 3' untranslated region of a flavivirus (murray valley encephalitis virus)

4PQV · XRN1-resistant flaviviral RNA: “Crystal structure of an XRN1-resistant RNA from the 3' untranslated region of a flavivirus (murray valley…”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.56). MolNFT v1 #103779 on…

PDB: 4PQV
Type: RNA
Length: 68 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: XRN1-resistant flaviviral RNA
Ligands: MG
Pockets: 2 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	XRN1-resistant flaviviral RNA	rna	68	—	—

Ligands and binding sites

MG · Magnesium ion · metal · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	399	0.56	0.75	27	MG
2	163	0.43	0.76	13	MG

Compared structures

4PQV · Crystal structure of an Xrn1-resistant RNA from the 3' untranslated region of a… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4PQV · PDBe 4PQV

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