Research workbench
Crystal structure of an XRN1-resistant RNA from the 3' untranslated region of a flavivirus (murray valley encephalitis virus)
Analyse Crystal structure of an XRN1-resistant RNA from the 3' untranslated region of a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PQV
- Type
- RNA
- Length
- 68 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- XRN1-resistant flaviviral RNA
- Ligands
- MG
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | XRN1-resistant flaviviral RNA | rna | 68 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 399 | 0.56 | 0.75 | 27 | MG |
| 2 | 163 | 0.43 | 0.76 | 13 | MG |
Compared structures
- 4PQV · Crystal structure of an Xrn1-resistant RNA from the 3' untranslated region of a… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4PQV · PDBe 4PQV
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.