MolNFT v1 · #103497 · protein

Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur sad using swiss light source data

4PII · N-GLYCOSYLASE/DNA lyase: “Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur sad using swiss…”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.65). MolNFT v1 #103497 on…

PDB: 4PII
Type: protein
Length: 239 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: N-GLYCOSYLASE/DNA lyase
EC: 3.2.2.-, 4.2.99.18
UniProt: Q8U2D5
Ligands: CL
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	N-GLYCOSYLASE/DNA lyase (EC 3.2.2.-, 4.2.99.18)	protein	239	67% helix, 0% strand	Q8U2D5

Ligands and binding sites

CL · Chloride ion · ion · 9 copies · chains A
IMD · Imidazole · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	232	0.65	0.83	34	CL

Compared structures

4PII · Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by… · the same entry in another collection · chain A against A, TM-score 1.00
Q8U2D5 · AlphaFold monomer V2.0 prediction for N-GLYCOSYLASE/DNA lyase (Q8U2D5) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8U2D5
Elsewhere: RCSB PDB 4PII · PDBe 4PII · UniProt Q8U2D5

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