Research workbench
Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by sulfur sad using swiss light source data
Analyse Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PII
- Type
- protein
- Length
- 239 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-GLYCOSYLASE/DNA lyase
- EC
- 3.2.2.-, 4.2.99.18
- UniProt
- Q8U2D5
- Ligands
- CL
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 67% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-GLYCOSYLASE/DNA lyase (EC 3.2.2.-, 4.2.99.18) | protein | 239 | 67% helix, 0% strand | Q8U2D5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 232 | 0.65 | 0.83 | 34 | CL |
Compared structures
- 4PII · Crystal structure of hypothetical protein PF0907 from pyrococcus furiosus solved by… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8U2D5 · AlphaFold monomer V2.0 prediction for N-GLYCOSYLASE/DNA lyase (Q8U2D5) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8U2D5
- Elsewhere: RCSB PDB 4PII · PDBe 4PII · UniProt Q8U2D5
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