MolNFT v1 · #103450 · protein
N-terminal domain of the capsid protein from bovine leukaemia virus (with no beta-hairpin)
4PH3 · Blv capsid: “N-terminal domain of the capsid protein from bovine leukaemia virus (with no beta-hairpin)”. X-ray diffraction, 1 ligand (IOD), 3 pockets (best druggability 0.49). MolNFT v1 #103450 on GenesisL1: 3D structure, binding…
- PDB
- 4PH3
- Type
- protein
- Length
- 230 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Blv capsid
- UniProt
- L0PI28
- Ligands
- IOD
- Pockets
- 3 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Blv capsid | protein | 115 | 67% helix, 0% strand | L0PI28 |
| B | Blv capsid | protein | 115 | 64% helix, 0% strand | L0PI28 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.49 | 0.75 | 20 | IOD |
| 2 | 56 | 0.35 | 0.79 | 10 | IOD |
| 3 | 58 | 0.29 | 0.74 | 10 | IOD |
Interfaces
1 interface between chains.
- A–B · 504 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
- 4PH3 · N-terminal domain of the capsid protein from bovine leukaemia virus (with no beta-hairpin) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt L0PI28
- Elsewhere: RCSB PDB 4PH3 · PDBe 4PH3 · UniProt L0PI28
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