MolNFT v1 · #103325 · protein + RNA
Crystal structure of bacillus anthracis ribosomal protein S8 in complex with an RNA aptamer
4PDB · 30S ribosomal protein S8: “Crystal structure of bacillus anthracis ribosomal protein S8 in complex with an RNA aptamer”. X-ray diffraction, 2 pockets (best druggability 0.69). MolNFT v1 #103325 on GenesisL1: 3D structure, binding…
- PDB
- 4PDB
- Type
- protein + RNA
- Length
- 167 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S8; Selex RNA aptamer
- UniProt
- W0CSD8
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 28% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S8 | protein | 129 | 28% helix, 33% strand | W0CSD8 |
| I | Selex RNA aptamer | rna | 38 | — | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 518 | 0.69 | 0.80 | 33 | empty |
| 2 | 67 | 0.30 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- A–I · 927 Ų buried · 23 hydrogen bonds · protein-nucleic
Compared structures
- 4PDB · Crystal structure of bacillus anthracis ribosomal protein S8 in complex with an RNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W0CSD8
- Elsewhere: RCSB PDB 4PDB · PDBe 4PDB · UniProt W0CSD8
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