Research workbench
Crystal structure of bacillus anthracis ribosomal protein S8 in complex with an RNA aptamer
Analyse Crystal structure of bacillus anthracis ribosomal protein S8 in complex with an… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4PDB
- Type
- protein + RNA
- Length
- 167 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S8; Selex RNA aptamer
- UniProt
- W0CSD8
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 28% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S8 | protein | 129 | 28% helix, 33% strand | W0CSD8 |
| I | Selex RNA aptamer | rna | 38 | — | — |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 518 | 0.69 | 0.80 | 33 | empty |
| 2 | 67 | 0.30 | 0.75 | 17 | empty |
Interfaces
1 interface between chains.
- A–I · 927 Ų buried · 23 hydrogen bonds · protein-nucleic
Compared structures
- 4PDB · Crystal structure of bacillus anthracis ribosomal protein S8 in complex with an RNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W0CSD8
- Elsewhere: RCSB PDB 4PDB · PDBe 4PDB · UniProt W0CSD8
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