MolNFT v1 · #103187 · RNA

Speciation of a group I intron into a lariat capping ribozyme

4P8Z · Didymium iridis partial igs, 18S rRNA gene, I-diri gene and…: “Speciation of a group I intron into a lariat capping ribozyme”. X-ray diffraction, 7 pockets (best druggability 0.78). MolNFT v1 #103187 on GenesisL1: 3D structure…

PDB: 4P8Z
Type: RNA
Length: 188 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Didymium iridis partial igs, 18S rRNA gene, I-diri gene and partial ITS1
Pockets: 7 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Didymium iridis partial igs, 18S rRNA gene, I-diri gene and partial ITS1	rna	188	—	—

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1071	0.78	0.81	49	empty
2	1062	0.73	0.78	49	empty
3	456	0.59	0.75	25	empty
4	349	0.49	0.72	30	empty
5	83	0.46	0.82	9	empty

Compared structures

4P8Z · Speciation of a group I intron into a lariat capping ribozyme · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4P8Z · PDBe 4P8Z

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.