Research workbench
Speciation of a group I intron into a lariat capping ribozyme
Analyse Speciation of a group I intron into a lariat capping ribozyme in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4P8Z
- Type
- RNA
- Length
- 188 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Didymium iridis partial igs, 18S rRNA gene, I-diri gene and partial ITS1
- Pockets
- 7 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Didymium iridis partial igs, 18S rRNA gene, I-diri gene and partial ITS1 | rna | 188 | — | — |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1071 | 0.78 | 0.81 | 49 | empty |
| 2 | 1062 | 0.73 | 0.78 | 49 | empty |
| 3 | 456 | 0.59 | 0.75 | 25 | empty |
| 4 | 349 | 0.49 | 0.72 | 30 | empty |
| 5 | 83 | 0.46 | 0.82 | 9 | empty |
Compared structures
- 4P8Z · Speciation of a group I intron into a lariat capping ribozyme · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4P8Z · PDBe 4P8Z
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