MolNFT v1 · #102947 · DNA
Structure of the complex of a bimolecular human telomeric DNA with coptisine
4P1D: “Structure of the complex of a bimolecular human telomeric DNA with coptisine”. X-ray diffraction, 2 ligands (KPT, K). MolNFT v1 #102947 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4P1D
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Telomeric DNA
- Ligands
- KPT, K
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Telomeric DNA | dna | 12 | — | — |
Ligands and binding sites
- KPT · 6,7-dihydro[1,3]dioxolo[4,5-g][1,3]dioxolo[7,8]isoquino[3,2-a]isoquinolin-5-ium · ligand · chains A, B
- K · Potassium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 551 Ų buried · 32 hydrogen bonds · nucleic-nucleic
Compared structures
- 4P1D · Structure of the complex of a bimolecular human telomeric DNA with Coptisine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4P1D · PDBe 4P1D
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