MolNFT v1 · #102842 · protein
Crystal structure analysis of the solac
4OYB · Adenylate cyclase type 10: “Crystal structure analysis of the solac”. X-ray diffraction, 2 ligands (ACE, 1VJ), 5 pockets (best druggability 0.76). MolNFT v1 #102842 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4OYB
- Type
- protein
- Length
- 468 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenylate cyclase type 10
- EC
- 4.6.1.1
- UniProt
- Q96PN6
- Ligands
- ACE, 1VJ
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adenylate cyclase type 10 (EC 4.6.1.1) | protein | 468 | 37% helix, 28% strand | Q96PN6 |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A
- 1VJ · ethyl 2-[3-[(4-azanyl-1,2,5-oxadiazol-3-yl)carbonyl]phenoxy]ethanoate · ligand · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 197 | 0.76 | 0.91 | 30 | GOL |
| 2 | 359 | 0.74 | 0.85 | 47 | 1VJ |
| 3 | 199 | 0.64 | 0.84 | 31 | empty |
| 4 | 143 | 0.42 | 0.75 | 24 | empty |
| 5 | 54 | 0.29 | 0.75 | 16 | empty |
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, artifact).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96PN6
- Elsewhere: RCSB PDB 4OYB · PDBe 4OYB · UniProt Q96PN6
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