MolNFT v1 · #10193 · protein

Structure of the bacteriophage PHI29 head-tail connector protein

1IJG · Upper collar protein: “Structure of the bacteriophage PHI29 head-tail connector protein”. X-ray diffraction, 20 pockets (best druggability 0.80). MolNFT v1 #10193 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1IJG
Type: protein
Length: 3,084 residues
Chains: 12
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Upper collar protein
UniProt: P04332
Pockets: 20 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H, I, J, K, L	Upper collar protein	protein	257	42% helix, 21% strand	P04332

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1040	0.80	0.81	124	empty
2	1056	0.79	0.81	119	empty
3	984	0.78	0.80	109	empty
4	682	0.73	0.79	80	empty
5	663	0.72	0.79	62	empty

Interfaces

24 interfaces between chains.

F–G · 3043 Å² buried · 29 hydrogen bonds · protein-protein
C–D · 2999 Å² buried · 29 hydrogen bonds · protein-protein
H–I · 2977 Å² buried · 33 hydrogen bonds · protein-protein
A–B · 2931 Å² buried · 33 hydrogen bonds · protein-protein
J–K · 2891 Å² buried · 30 hydrogen bonds · protein-protein

Compared structures

1IJG · Structure of the Bacteriophage phi29 Head-Tail Connector Protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04332
Elsewhere: RCSB PDB 1IJG · PDBe 1IJG · UniProt P04332

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