Research workbench
Structure of the bacteriophage PHI29 head-tail connector protein
Analyse Structure of the bacteriophage PHI29 head-tail connector protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1IJG
- Type
- protein
- Length
- 3,084 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Upper collar protein
- UniProt
- P04332
- Pockets
- 20 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L | Upper collar protein | protein | 257 | 42% helix, 21% strand | P04332 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1040 | 0.80 | 0.81 | 124 | empty |
| 2 | 1056 | 0.79 | 0.81 | 119 | empty |
| 3 | 984 | 0.78 | 0.80 | 109 | empty |
| 4 | 682 | 0.73 | 0.79 | 80 | empty |
| 5 | 663 | 0.72 | 0.79 | 62 | empty |
Interfaces
24 interfaces between chains.
- F–G · 3043 Ų buried · 29 hydrogen bonds · protein-protein
- C–D · 2999 Ų buried · 29 hydrogen bonds · protein-protein
- H–I · 2977 Ų buried · 33 hydrogen bonds · protein-protein
- A–B · 2931 Ų buried · 33 hydrogen bonds · protein-protein
- J–K · 2891 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 1IJG · Structure of the Bacteriophage phi29 Head-Tail Connector Protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04332
- Elsewhere: RCSB PDB 1IJG · PDBe 1IJG · UniProt P04332
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