MolNFT v1 · #101551 · protein
Crystal structure of the complex between SNU13P and the pep domain of RSA1
4NUT · 13 kda ribonucleoprotein-associated protein: “Crystal structure of the complex between SNU13P and the pep domain of RSA1”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #101551 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4NUT
- Type
- protein
- Length
- 149 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 13 kda ribonucleoprotein-associated protein; Ribosome assembly 1 protein
- UniProt
- P39990, Q08932
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 55% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 13 kda ribonucleoprotein-associated protein | protein | 122 | 50% helix, 16% strand | P39990 |
| B | Ribosome assembly 1 protein | protein | 27 | 78% helix, 0% strand | Q08932 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 923 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 4NUT · Crystal structure of the complex between Snu13p and the PEP domain of Rsa1 · the same entry in another collection · chain A against A, TM-score 1.00
- P39990 · AlphaFold monomer V2.0 prediction for 13 kda ribonucleoprotein- associated protein… · a predicted model of the same protein · chain A against A, TM-score 0.93
- Q08932 · AlphaFold monomer V2.0 prediction for ribosome assembly 1 protein (Q08932) · a predicted model of the same protein · chain B against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39990
- Every structure of UniProt Q08932
- Elsewhere: RCSB PDB 4NUT · PDBe 4NUT · UniProt P39990 · UniProt Q08932
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