MolNFT v1 · #101490 · protein
Crystal structure of the UTP21 tandem wd domain
4NSX · U3 small nucleolar RNA-associated protein 21: “Crystal structure of the UTP21 tandem wd domain”. X-ray diffraction, 6 pockets (best druggability 0.79). MolNFT v1 #101490 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4NSX
- Type
- protein
- Length
- 634 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- U3 small nucleolar RNA-associated protein 21
- UniProt
- Q06078
- Pockets
- 6 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U3 small nucleolar RNA-associated protein 21 | protein | 634 | 0% helix, 52% strand | Q06078 |
Ligands and binding sites
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 921 | 0.79 | 0.81 | 64 | empty |
| 2 | 829 | 0.74 | 0.79 | 59 | empty |
| 3 | 70 | 0.70 | 0.96 | 23 | empty |
| 4 | 191 | 0.48 | 0.76 | 25 | empty |
| 5 | 141 | 0.43 | 0.76 | 23 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06078
- Elsewhere: RCSB PDB 4NSX · PDBe 4NSX · UniProt Q06078
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