MolNFT v1 · #101388 · protein
Crystal structure of protein with unknown function from deinococcus radiodurans at P61 spacegroup
4NPO · Uncharacterized protein: “Crystal structure of protein with unknown function from deinococcus radiodurans at P61 spacegroup”. X-ray diffraction, 2 ligands (ACE, SO4), 2 pockets (best druggability 0.62). MolNFT v1 #101388 on…
- PDB
- 4NPO
- Type
- protein
- Length
- 207 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q9RSM4
- Ligands
- ACE, SO4
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 102 | 38% helix, 36% strand | Q9RSM4 |
| B | Uncharacterized protein | protein | 105 | 32% helix, 38% strand | Q9RSM4 |
Ligands and binding sites
- ACE · Acetyl group · ligand · 2 copies · chains B
- SO4 · Sulfate ion · ion · chains B
- ACT · Acetate ion · additive · 3 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.62 | 0.86 | 28 | ACE |
| 2 | 97 | 0.60 | 0.87 | 25 | ACT |
Interfaces
1 interface between chains.
- A–B · 1706 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 4NPO · Crystal structure of protein with unknown function from Deinococcus radiodurans at P61… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RSM4
- Elsewhere: RCSB PDB 4NPO · PDBe 4NPO · UniProt Q9RSM4
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