Research workbench
Crystal structure of protein with unknown function from deinococcus radiodurans at P61 spacegroup
Analyse Crystal structure of protein with unknown function from deinococcus radiodurans… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4NPO
- Type
- protein
- Length
- 207 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q9RSM4
- Ligands
- ACE, SO4
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 102 | 38% helix, 36% strand | Q9RSM4 |
| B | Uncharacterized protein | protein | 105 | 32% helix, 38% strand | Q9RSM4 |
Ligands and binding sites
- ACE · Acetyl group · ligand · 2 copies · chains B
- SO4 · Sulfate ion · ion · chains B
- ACT · Acetate ion · additive · 3 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.62 | 0.86 | 28 | ACE |
| 2 | 97 | 0.60 | 0.87 | 25 | ACT |
Interfaces
1 interface between chains.
- A–B · 1706 Ų buried · 25 hydrogen bonds · protein-protein
Compared structures
- 4NPO · Crystal structure of protein with unknown function from Deinococcus radiodurans at P61… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RSM4
- Elsewhere: RCSB PDB 4NPO · PDBe 4NPO · UniProt Q9RSM4
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