MolNFT v1 · #101317 · protein
Structural basis for targeting the ribosomal protein S1 of mycobacterium tuberculosis by pyrazinamide
4NNH · 30S ribosomal protein S1: “Structural basis for targeting the ribosomal protein S1 of mycobacterium tuberculosis by pyrazinamide”. X-ray diffraction, 5 pockets (best druggability 0.58). MolNFT v1 #101317 on GenesisL1: 3D structure…
- PDB
- 4NNH
- Type
- protein
- Length
- 328 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S1
- UniProt
- A0QYY6
- Pockets
- 5 · best druggability 0.58
Structure
x-ray diffraction · 2 distinct chains · 38% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S1 | protein | 164 | 39% helix, 27% strand | A0QYY6 |
| B | 30S ribosomal protein S1 | protein | 164 | 37% helix, 27% strand | A0QYY6 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 213 | 0.58 | 0.80 | 29 | empty |
| 2 | 64 | 0.32 | 0.76 | 17 | empty |
| 3 | 62 | 0.29 | 0.74 | 16 | empty |
| 4 | 50 | 0.27 | 0.74 | 12 | empty |
| 5 | 50 | 0.25 | 0.73 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 563 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4NNH · Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by… · the same entry in another collection · chain A against A, TM-score 1.00
- A0QYY6 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S1 (A0QYY6) · a predicted model of the same protein · chain B against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QYY6
- Elsewhere: RCSB PDB 4NNH · PDBe 4NNH · UniProt A0QYY6
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