MolNFT v1 · #100991 · protein
Crystal structure of L. decastes alpha-galactosyl-binding lectin in complex with alpha-methylgalactoside
4NDU: “Crystal structure of L. decastes alpha-galactosyl-binding lectin in complex with alpha-methylgalactoside”. X-ray diffraction, 1 ligand (AMG). MolNFT v1 #100991 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4NDU
- Type
- protein
- Length
- 188 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-galactosyl-binding lectin
- UniProt
- A7UNK4
- Ligands
- AMG
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Alpha-galactosyl-binding lectin | protein | 94 | 32% helix, 31% strand | A7UNK4 |
Ligands and binding sites
- AMG · methyl alpha-D-galactopyranoside · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 972 Ų buried · 17 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 4NDU · Crystal structure of L. decastes alpha-galactosyl-binding lectin in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- A7UNK4 · AlphaFold monomer V2.0 prediction for alpha-galactosyl-binding lectin (A7UNK4) · a predicted model of the same protein · chain B against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7UNK4
- Elsewhere: RCSB PDB 4NDU · PDBe 4NDU · UniProt A7UNK4
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