MolNFT v1 · #100157 · protein
Staphyloferrin B precursor biosynthetic enzyme sbnb bound to citrate and NAD+
4MP6 · Putative ornithine cyclodeaminase: “Staphyloferrin B precursor biosynthetic enzyme sbnb bound to citrate and NAD+”. X-ray diffraction, 1 ligand (NAD), 2 pockets (best druggability 0.78). MolNFT v1 #100157 on GenesisL1: 3D structure…
- PDB
- 4MP6
- Type
- protein
- Length
- 334 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative ornithine cyclodeaminase
- UniProt
- Q8NYS7
- Ligands
- NAD
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ornithine cyclodeaminase | protein | 334 | 36% helix, 23% strand | Q8NYS7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 763 | 0.78 | 0.82 | 77 | NAD, CIT |
| 2 | 54 | 0.38 | 0.80 | 16 | empty |
Compared structures
- 4MP6 · Staphyloferrin B precursor biosynthetic enzyme SbnB bound to citrate and NAD+ · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NYS7
- Elsewhere: RCSB PDB 4MP6 · PDBe 4MP6 · UniProt Q8NYS7
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