MolNFT v1 · #100050 · protein
Crystal structure analysis of the putative thioether synthase sgvp involved in the tailoring step of griseoviridin
4MM0 · P450-like monooxygenase: “Crystal structure analysis of the putative thioether synthase sgvp involved in the tailoring step of…”. X-ray diffraction, 1 ligand (HEM), 7 pockets (best druggability 0.86). MolNFT v1 #100050 on GenesisL1…
- PDB
- 4MM0
- Type
- protein
- Length
- 786 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P450-like monooxygenase
- EC
- 1.14.13.-
- Ligands
- HEM
- Pockets
- 7 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | P450-like monooxygenase (EC 1.14.13.-) | protein | 392 | 51% helix, 10% strand | — |
| B | P450-like monooxygenase (EC 1.14.13.-) | protein | 394 | 50% helix, 10% strand | — |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 949 | 0.86 | 0.87 | 73 | HEM |
| 2 | 928 | 0.85 | 0.87 | 65 | HEM |
| 3 | 793 | 0.78 | 0.81 | 59 | empty |
| 4 | 127 | 0.51 | 0.81 | 23 | empty |
| 5 | 136 | 0.51 | 0.80 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 599 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 4MM0 · Crystal Structure Analysis of the Putative Thioether Synthase SgvP Involved in the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4MM0 · PDBe 4MM0
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