Research workbench
Crystal structure analysis of the putative thioether synthase sgvp involved in the tailoring step of griseoviridin
Analyse Crystal structure analysis of the putative thioether synthase sgvp involved in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MM0
- Type
- protein
- Length
- 786 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- P450-like monooxygenase
- EC
- 1.14.13.-
- Ligands
- HEM
- Pockets
- 7 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | P450-like monooxygenase (EC 1.14.13.-) | protein | 392 | 51% helix, 10% strand | — |
| B | P450-like monooxygenase (EC 1.14.13.-) | protein | 394 | 50% helix, 10% strand | — |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 949 | 0.86 | 0.87 | 73 | HEM |
| 2 | 928 | 0.85 | 0.87 | 65 | HEM |
| 3 | 793 | 0.78 | 0.81 | 59 | empty |
| 4 | 127 | 0.51 | 0.81 | 23 | empty |
| 5 | 136 | 0.51 | 0.80 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 599 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 4MM0 · Crystal Structure Analysis of the Putative Thioether Synthase SgvP Involved in the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4MM0 · PDBe 4MM0
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