MolNFT v1 · #539029 · protein
AlphaFold monomer V2.0 prediction for putative ribosomal RNA large subunit methyltransferase ywbd (P39587)
P39587: “AlphaFold monomer V2.0 prediction for putative ribosomal RNA large subunit methyltransferase ywbd (P39587)”. 2 pockets (best druggability 0.75). MolNFT v1 #539029 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- P39587
- Type
- protein
- Length
- 396 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80E4770D64c852Ea54fa095e4246B7F0d7647117
- Molecule
- Putative ribosomal RNA large subunit methyltransferase ywbd
- UniProt
- P39587
- Pockets
- 2 · best druggability 0.75
Structure
1 distinct chain · 32% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative ribosomal RNA large subunit methyltransferase ywbd | protein | 396 | 32% helix, 31% strand | P39587 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 848 | 0.75 | 0.79 | 80 | empty |
| 2 | 76 | 0.33 | 0.75 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39587
- Elsewhere: UniProt P39587 · AlphaFold DB P39587
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